Sains Malaysiana 48(12)(2019): 2841–2847
http://dx.doi.org/10.17576/jsm-2019-4812-25
Vibrational Analysis of Microtubules Embedded
within Viscoelastic Medium using Orthotropic Kelvin like Model
(Analisis
Getaran Bermikrotubul
Tertanam dalam Medium Likat Kenyal menggunakan
Model seperti Ortotropisme
Kelvin)
MUHAMMAD SAFEER1,2
& MUHAMMAD TAJ1*
1Department of Mathematics,
The University of Azad Kashmir, Muzaffarabad 13100, Pakistan
2Department of Mathematics,
University of Poonch Rawalwkot,
Azad Kashmir
Received: 5 March 2019/Accepted: 23
December 2019
ABSTRACT
Microtubules,
the key components of cytoskeleton of all living cells, are important
for maintaining the cell shape and transporting the cellular organelles.
Understanding the mechanics of microtubules is very important for
these functions. Mechanics of these components are greatly affected
when they are embedded in cells. To understand the mechanical properties
of microtubules in living cells, we developed an orthotropic-Kelvin
like model and investigated the vibrational behavior when they are
embedded in surrounding elastic medium. We considered them as orthotropic
elastic shell and its surrounding elastic matrix as Kelvin model.
We found that due to mechanical coupling of these components with
the elastic medium, the flexural vibration is increased and radial
frequencies in all modes are increased considerably while other
vibrational modes are not affected that much.
Keywords:
Elastic medium; Kelvin foundation; microtubules; vibration
ABSTRAK
Mikrotubul merupakan
komponen utama
sita rangka bagi
semua sel hidup dan adalah
penting untuk
mengekalkan bentuk sel dan membawa
organel sel. Memahami
mekanik mikrotubul adalah sangat penting
bagi fungsi
tersebut. Mekanik untuk komponen ini adalah sangat
terkesan apabila
mereka terbenam di dalam sel. Untuk memahami sifat mekanik mikrotubul dalam sel hidup,
kami telah membangunkan
model seperti Ortotropik-Kelvin
dan mengkaji
tingkah laku getaran
apabila ia dibenamkan di persekitaran medium
kenyal. Kami menganggap
ia sebagai kelongsong
kenyal Ortotropik
dan persekitaran matrik kenyal sebagai
model Kelvin. Kami telah mendapati
bahawa kesan
daripada gandingan mekanik oleh komponen
ini dengan medium
kenyal dan getaran
lentur adalah
meningkat dan frekuensi
radial di dalam semua
mod adalah meningkat dengan ketara manakala
mod-mod getaran yang lain tidak
begitu banyak
yang terkesan.
Kata
kunci: Asas Kelvin; getaran; medium kenyal; mikrotubul
REFERENCES
Adames, N.R.
& Cooper, J.A. 2000. Microtubule interactions with the cell
cortex causing nuclear movements in Saccharomyces cerevisiae.
J. Cell Biol. 149(4): 863-874.
Boykov, I.,
Boykova, A. & Ventsel, E. 2004.
Fundamental solutions for thick sandwich plates. Engineering
Analysis with Boundary Elements 28(12): 1437-1444.
Brangwynne, C.P.,
MacKintosh, F.C., Kumar, S., Geisse, N.A., Talbot, J., Mahadevan,
L., Parker, K.K., Ingber, D.E. & Weitz, D.A. 2006. Microtubules can bear enhanced compressive
loads in living cells because of lateral reinforcement. J. Cell
Biol. 173(5): 733-741.
Burton, G.W. & Forbes, I. 1960. The genetics and manipulation
of obligate apomixis in common Bahia grass
Pas-palum notatum Flügge.
Paper presented at the Proceedings of the Eighth International
Grassland Congress held at the University of Reading, England,
11-21 July.
Chung-Davidson, Y.W., Huertas, M. &
Li, W. 2010. A review of research in fish pheromones. In Chemical
Communication in Crustaceans, edited by Breithaupt,
T. & Thiel, M. New York: Springer. pp. 467-482.
Feldhendler, D.
2002. Augusto Boal and Jacob L.Moreno: Theatre and therapy. In Playing Boal: Theatre, Theraphy & Activitism, edited by Schutzman,
M. & Cohen-Cruz, J. London: Routledge. pp. 97-119.
Felgner, P.,
Barenholz, Y., Behr, J., Cheng, S., Cullis,
P., Huang, L., Jessee, J.A., Seymour,
L., Szoka, F., Thierry, A.R., Wagner, E. & Thierry, A. 1997.
Nomenclature for synthetic gene delivery systems. Human Gene
Therapy 8(5): 511-512.
Forbes, J., Russell, J., Miyahara, S., Zhang, X., Palo, S., Mlynczak, M., Mertens. C.J. &
Hagan, M. 2006. Troposphere-thermosphere tidal coupling as measured
by the SABER instrument on TIMED during July-September 2002. Journal
of Geophysical Research: Space Physics 111(A10). https:// doi.org/10.1029/2005JA011492.
Hardin, R. 2015. Collective Action. New York: RFF Press.
Kiyoi, H.,
Naoe, T., Nakano, Y., Yokota, S., Minami, S., Miyawaki, S., Asou, N., Kuriyama, K., Jinnai, I., Shimazaki,
C., Akiyama, H., Saito, K., Oh, H., Motoji,
T., Omoto, E., Saito, H., Ohno, R. &
Ueda, R. 1999. Prognostic implication of FLT3 and N-RAS gene mutations
in acute myeloid leukemia. Blood 93(9): 3074-3080.
Kreider, J.C.
& Blumberg, M.S. 2005. Geotaxis and beyond: Commentary on Motz and Alberts. Neurotoxicology
and Teratology 27(4): 535-538.
Leonova, A.,
Pokorny, J. & Smith, V.C. 2003. Spatial frequency processing
in inferred PC-and MC-pathways. Vision Research 43(20): 2133-2139.
Meyers, M.A. & Chawla, K.K. 1999. Mechanical Behavior of Materials.
Englewood Cliffs: Prentice-Hall.
Morehouse, B.J., Carter, R.H. & Sprouse,
T.W. 2000. The implications of sustained drought for transboundary
water management in Nogales, Arizona, and Nogales, Sonora. Natural
Resources Journal 40(4): 783-817.
Nogales,
E., Whittaker, M., Milligan, R.A. & Downing, K.H. 1999. High-resolution
model of the microtubule. Cell 96(1): 79-88.
Pet-Soede, C., Cesar, H.S. & Pet, J. 1999. An economic analysis
of blast fishing on Indonesian coral reefs. Environmental Conservation
26(2): 83-93.
Schoutens, W. 2005. Moment
swaps. Quantitative Finance 5(6): 525-530.
Shah,
S., Li, J., Moffatt, B.A. & Glick, B.R. 1998. Isolation and
characterization of ACC deaminase genes from two different plant
growth-promoting rhizobacteria. Canadian
Journal of Microbiology 44(9): 833-843.
Sharma,
P., Khatri, V.K., Gu, X., Song, Y., Shen,
M.L., Riggs- Sauthier, J., Anand,
N.K., Kozlowski, A., Odinecs, A. &
Riley, T.A. 2019. Derivatives of 6-(2, 3-dichlorophenyl)-1, 2, 4-triazin-5-amine:
Google Patents.
Shen,
R. & Andrews, S.A. 2011. NDMA formation kinetics from three
pharmaceuticals in four water matrices. Water Research 45(17):
5687-5694.
Sirenko, Y.M., Stroscio, M.A. & Kim, K. 1996. Elastic vibrations of microtubules
in a fluid. Physical Review E 53(1): 1003.
Taj,
M. & Zhang, J. 2014. Analysis of wave propagation in orthotropic
microtubules embedded within elastic medium by Pasternak model.
J. Mech. Behav. Biomed. Mater. 30: 300-305.
Taj,
M. & Zhang, J. 2012. Analysis of vibrational behaviors of microtubules
embedded within elastic medium by Pasternak model. Biochemical
and Biophysical Research Communications 424(1): 89-93.
Taj,
M. & Zhang, J.Q. 2011. Buckling of embedded microtubules in
elastic medium. Applied Mathematics and Mechanics 32(3):
293-300.
Van
Buren, M.E. & Erskine, W. 2002. The 2002 ASTD state of the industry
report. Alexandria, VA: American Society of Training and Development.
Van
Buren, V., Odde, D.J. & Cassimeris,
L. 2002. Estimates of lateral and longitudinal bond energies within
the microtubule lattice. Proceedings of the National Academy
of Sciences 99(9): 6035-6040.
Wang,
Y., Kong, L.J., Li, C. & Bureau, D.P. 2006. Effect of replacing
fish meal with soybean meal on growth, feed utilization and carcass
composition of cuneate drum (Nibea
miichthioides). Aquaculture 261(4):
1307-1313.
Yang,
X., Schadt, E.E., Wang, S., Wang, H.,
Arnold, A.P., Ingram- Drake, L., Drake, T.A. & Lusis,
A.J. 2006. Tissue-specific expression and regulation of sexually
dimorphic genes in mice. Genome Research 16(8): 995-1004.
Zhang,
B., Georgiev, O., Hagmann,
M., Günes, Ç., Cramer, M., Faller, P.,
Vasák, M. & Schaffner, W. 2003.
Activity of metal-responsive transcription factor 1 by toxic heavy
metals and H2O2 in vitro is modulated by metallothionein.
Molecular and Cellular Biology 23(23): 8471-8485.
Zhao,
Z., Dua, D. & Singh, S. 2017. Generating
natural adversarial examples. arXiv
preprint arXiv:1710.11342.
Zheng,
J., Trafny, E.A., Knighton,
D.R., Xuong, N.H., Taylor, S.S., Ten Eyck,
L.F. & Sowadski, J.M. 1993. 2.2 Å
refined crystal structure of the catalytic subunit of cAMP-dependent
protein kinase complexed with MnATP and
a peptide inhibitor. Acta Crystallographica
Section D: Biological Crystallography 49(3): 362-365.
Zhou,
Y., Wu, Y., Yang, L., Fu, L., He, K., Wang, S., Hao
J., Chen, J. & Li, C. 2010. The impact of transportation control
measures on emission reductions during the 2008 Olympic Games in
Beijing, China. Atmospheric Environment 44(3): 285-293.
*Corresponding author; email: Muhammad_taj75@yahoo.com
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