Sains Malaysiana 48(9)(2019):
1879–1885
http://dx.doi.org/10.17576/jsm-2019-4809-08
Crystal Structure, Hirshfeld Analysis and DFT Study of 6,7-Dimethoxy-3-[(5-Chloro-1,3,3-Trimethylindolin-2-Ylidene)Methyl]Isobenzofuran-1(3h)-One
(Struktur Hablur, Analisis Hirshfeld dan Kajian DFT 6,7- Dimetoksi -3-[(5-Kloro-1,3,3-Trimetillindolin-2- ilidena)]
Isobenzofuran-1(3h)-one)
SUHAILA SAPARI1, EMMA IZZATI ZAKARIAH1, NORAISYAH ABDUL KADIR JILANI1, SHERYN WONG1, MOHAMMAD FADZLEE NGATIMAN2 & SITI AISHAH HASBULLAH1*
1Centre
of Advanced Materials and Renewable Resources, Faculty of Science and
Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor Darul Ehsan, Malaysia
2Center
for Research and Instrumentation Management, Universiti Kebangsaan Malaysia, 43600 UKM Bangi,
Selangor Darul Ehsan, Malaysia
Received:
7 May 2019/Accepted: 21 June 2019
ABSTRACT
The coupling reaction
of 5-chloro-1,3,3-methylenindoline with
6-formyl-2,3-dimethoxy benzoic acid under solvent-free microwave
irradiation gave of 6,7-dimethoxy-3-[(5-chloro-1,3,3-trimethylindolin-2-ylidene)methyl]isobenzofuran-1(3H)-one,
C22H22ClNO4
in high yield. The molecular structure consists of
indoline system (C1-C8/N1) and isobenzofuran
system (C10-C17/O1) connected by the enamine carbon. The title compound
is crystallised in P21/n space group,
Z'=4 with two independent molecules in centrosymmetric dimer. By
using Hirshfeld surface and two-dimensional
fingerprint plots, the presence of short intermolecular interactions
and π-π stacking in the crystal structure were analysed.
The DFT study
is performed by comparing the calculation data with the X-ray data
and analysing the HOMO and LUMO value,
which gave -0.26952 a.u. and -0.17760
a.u., respectively.
Keywords: Crystal; DFT; Hirshfeld analysis; phthalide;
synthesis
ABSTRAK
Tindak balas pergandingan
antara 5-kloro-1,3,3-metilenindolina
dengan 6-formil-2,3-dimetoksi benzoik
asid dalam
keadaan bebas pelarut
di bawah sinaran
gelombang menghasilkan 6,7-dimetoksi-3-[(5-kloro-1,3,3-trimetilindolin-2-ilidena)
metil]isobenzofuran-1(3H)-one, C22H22ClNO4
dalam hasil yang tinggi. Struktur molekul terdiri daripada sistem indolina (C1-C8/N1) dan sistem isobenzofuran (C10-C17/O1)
yang disambungkan oleh
karbon enamina. Sebatian ini menghablur
dalam kumpulan
ruang P21/n, Z’=4 dengan
dua molekul bebas
dalam dimer yang berpusat
simetri. Dengan menggunakan permukaan Hirshfeld dan plot pengecaman dua dimensi, kehadiran interaksi intermolekul yang
pendek dan susunan
π-π dalam struktur
hablur dianalisis. Kajian DFT dilakukan
dengan membandingkan
data perhitungan dengan data sinar
X dan menganalisis nilai HOMO dan
LUMO,
yang masing-masing memberi
-0.26952 a.u. dan
-0.17760 a.u.
Kata kunci: Analisis
Hirshfeld; DFT; hablur;
phtalida; sintesis
REFERENCES
Ahyak, H., Rohadi, A., Ngah, F.A.A., Yamin, B. & Hasbullah, S.A.
2016. An application of microwave irradiation technique in preparation of thiourea derivatives. Malaysian Journal of Analytical
Sciences 20(2): 231-237.
Aihara, J.I. 1999.
Reduced HOMO-LUMO gap as an index of kinetic stability for polycyclic aromatic
hydrocarbons. The Journal of Physical Chemistry A 103(37): 7487-7495.
Allmann, R., Hohaus, E. & Olejnik, S.
1982. boron chelates and boron-metal chelates, x [1]. 3-(2-hydroxyphenyl)- 2,2-diphenyl-1-oxa-3-azonia-2-borata-naphthalene-methanol(1/1): synthesis,
spectroscopic investigations and crystal structure. Zeitschrift für Naturforschung B 37(11):
1450-1455.
Ashraf,
M., Teshome, A., Kay, A.J., Gainsford,
G.J., Bhuiyan, M.D.H., Asselberghs,
I. & Clays, K. 2012. Synthesis and optical properties of NLO chromophores
containing an indoline donor and azo linker. Dyes
and Pigments 95(3): 455-464.
Becke, A.D. 1993.
Density-functional thermochemistry. III. The role of exact exchange. The
Journal of Chemical Physics 98(7): 5648-5652.
Bentiss, F., Traisnel, M., Vezin, H. & Lagrenée, M. 2003. Linear resistance model of the
inhibition mechanism of steel in HCl by triazole and oxadiazole derivatives: Structure-Activity correlations. Corrosion Science 45(2):
371-380.
Bruker,
S. 2016. Saint. Bruker AXS Inc., Madison, Wisconsin.
Bruker,
S. 2002. Saint. Bruker AXS Inc., Madison, Wisconsin.
Burnett,
M.N. & Johnson, C.K. 1996. ORTEPIII. Report ORNL- 6895. Tennessee:
Oak Ridge National Laboratory.
Dolomanov, O.V., Bourhis, L.J., Gildea, R.J.,
Howard, J.A. & Puschmann, H. 2009. OLEX2: A
complete structure solution, refinement and analysis program. Journal of
Applied Crystallography 42(2): 339-341.
Freitas,
V.L., Santos, C.P., da Silva, M.D.R. & da Silva, M.A.R. 2016. The effect of
ketone groups on the energetic properties of phthalan derivatives. The Journal of Chemical Thermodynamics 96: 74-81.
Gainsford, G.J., Ashraf, M.
& Kay, A.J. 2011. 4-tert-Butyl- 2-[2-(1,3,3-trimethylindolin-2-ylidene) ethylidene] cyclohexanone. Acta Crystallographica Section E: Structure Reports Online 67(5): o1210-o1210.
Gerasov, A.O., Shandura, M.P., Kovtun, Y.P.,
Vlasenko, Y.G. & Gorchev, V.F. 2008. 1, 3, 2-(2H)-dioxaborine polymethine dyes on the base of dehydroacetic acid-Effective fluorescent amine probes. Journal of Heterocyclic Chemistry 45(6):
1665-1672.
Göttker-Schnetmann, I., Aumann, R., Kataeva, O., Holst,
C. & Fröhlich, R. 2001. Spiro-fused cyclopentadienes and novel pyridinium carbonyltungstates from (1-alkynyl) carbene tungsten complexes and exo-methylene
n-heterocycles. Competition between 1, 4-addition, 1, 2-addition, and
metathesis1. Organometallics 20(13): 2889-2904.
Groom,
C.R., Bruno, I.J., Lightfoot, M.P. & Ward, S.C. 2016. The Cambridge
structural database. Acta Crystallographica Section B: Structural Science, Crystal
Engineering and Materials 72(2): 171-179.
Horváth, I.T. 2003. Encyclopedia
of Catalysis. 6 edition. Hoboken: Wiley-Interscience.
Inubushi, Y., Tsuda, Y., Konita, T. &
Matsumoto, S. 1964. Shihunine: A new phthalide-pyrrolidine alkaloid. Chemical and
Pharmaceutical Bulletin 12(6): 749-750.
Karmakar, R., Pahari, P.
& Mal, D. 2014. Phthalides and phthalans: Synthetic methodologies and their applications
in the total synthesis. Chemical Reviews 114(12): 6213-6284.
Landge, S.M., Berryman,
M. & Toeroek, B. 2008. Microwave-assisted solid
acid-catalyzed one-pot synthesis of isobenzofuran-1 (3H)-ones. Tetrahedron
Letters 49(29-30): 4505-4508.
Laréginie, P., Lokshin, V., Samat, A., Guglielmetti, R. & Pèpe, G.
1996. First permanent opened forms in spiro [indoline-oxazine] series: Synthesis and structural
elucidation. Journal of the Chemical Society, Perkin Transactions 2(1):
107-111.
Ling,
S.W.S., Latip, J., Hassan, N.I. & Hasbullah, S.A. 2018. Synthesis of phthalide-fused indoline by microwave irradiation and preliminary
binding study with metal cations. AIP Conference Proceedings 1940(1):
020102.
Macrae, C.F., Bruno,
I.J., Chisholm, J.A., Edgington, P.R., McCabe, P., Pidcock, E., Rodriguez-Monge, L.,
Taylor, R., Streek, J.V.D. & Wood, P.A. 2008.
Mercury CSD 2.0-New features for the visualization and investigation of crystal
structures. Journal of Applied Crystallography 41(2): 466- 470.
McKinnon,
J.J., Jayatilaka, D. & Spackman, M.A. 2007.
Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications 37:
3814- 3816.
Mekhael, M.K., Smith, R.J., Bienz, S., Linden, A. & Heimgartner,
H. 2002. A novel ring enlargement of 2H-azirine-3-methyl (phenyl) amines via amidinium-intermediates: A new synthetic approach to 2,
3-dihydro-1, 3, 3-trimethylindol-2- one. Zeitschrift für Naturforschung B 57(4):
444-452.
Rohadi, A., Hasbullah, S.A., Lazim, M.A.S.M.
& Nordin, R. 2014. Improving the synthesis of spiropyran derivatives using microwave irradiation method. Heterocycles 89(4): 1017-1024.
Sarkar, A., Middya, T.R. & Jana, A.D. 2012. A QSAR study of radical
scavenging antioxidant activity of a series of flavonoids using DFT based
quantum chemical descriptors- The importance of group frontier electron
density. Journal of Molecular Modeling 18(6): 2621-2631.
Sheldrick, G.M. 1997. SHELXL-97,
Program for crystal structure refinement. University of Goettingen,
Germany.
Sheldrick, G.M. 2008. A short
history of SHELX. Acta Crystallographica Section A: Foundations of Crystallography 64(1): 112-122.
Sheldrick, G.M. 2015a. Crystal
structure refinement with SHELXL. Acta Crystallographica Section C: Structural Chemistry 71(1):
3-8.
Sheldrick, G.M. 2015b.
SHELXT-Integrated space-group and crystal-structure determination. Acta Crystallographica Section A: Foundations and Advances 71(1): 3-8.
Sheryn, W., Ngah, F.A.A., Latip, J., Hassan,
N.I. & Hasbullah, S.A. 2018. Solvent-free
microwave accelerated synthesis and structural characterization of phthalide-fused indolines. Heterocycles 96(5): 839-849.
Spackman, M.A. & Jayatilaka, D. 2009. Hirshfeld surface analysis. CrystEngComm 11(1):
19-32.
Spek, A.L. 2009. Structure
validation in chemical crystallography. Acta Crystallographica Section D: Biological
Crystallography 65(2): 148-155.
Srivastava, A., Rawat, P., Tandon, P. &
Singh, R. 2012. A computational study on conformational geometries, chemical
reactivity and inhibitor property of an alkaloid bicuculline with γ-aminobutyric acid (GABA) by DFT. Computational and Theoretical
Chemistry 993: 80-89.
Turner, M., McKinnon,
J., Wolff, S., Grimwood, D., Spackman, P., Jayatilaka, D. & Spackman, M. 2017. CrystalExplorer17. University of Western Australia.
Westrip, S.P. 2010. publCIF: Software for editing, validating and formatting
crystallographic information files. Journal of Applied Crystallography 43(4):
920-925.
Yagi, S., Nakai, K., Hyodo, Y. & Nakazumi, H. 2002. Synthesis of near-infrared absorbing bisquarylium dyes bearing unsymmetrically extended
π-conjugation structures. Synthesis 03: 0413-0417.
*Corresponding
author; email: aishah80@ukm.edu.my
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